Package: MetPhenoR
Title: A Transparent Analysis Pipeline for Mammalian Metabolic
        Phenotype Microarray Data
Version: 1.3
Authors@R: 
  c(person(given="Katja",family= "Danielzik", email="katja.danielzik@uni-due.de", 
           role = c("aut", "cre", "cph"),
           comment=c(ORCID="0009-0007-5021-6212")),
    person(given="Willson",family = "Tjioe",
            role = "aut",
            comment=c(ORCID="0009-0003-3530-1727")),
    person(given="Julia", family="Asche",
            role = "ctb"),
    person(given="Johann",family="Matschke",
            role="ctb",
           comment=c(ORCID="0000-0003-4878-8741")),
    person(given="Daniel",family="Hoffmann",
            role="ctb",
           comment=c(ORCID="0000-0003-2973-7869")))
Description: Provides a transparent, end-to-end workflow for analyzing
        high-throughput phenotype microarray data in mammalian cell
        cultures. It begins with automated reading and noise
        correction, followed by comprehensive quality control via
        visual diagnostics, i.e. detecting missing wells, anomalous
        curve shapes and variance. Area under Curve is computed as a
        summary metric. Biological annotations (custom or in-built for
        PM-M01,PM-M02, PM-M11 - PM-M14) enable group-level comparisons.
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Depends: R (>= 4.5.0)
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
Imports: readr, dplyr, magrittr, tidyselect, ggplot2, tidyr, stringr,
        purrr, tidyselect, scales, stats, patchwork, readr, ggforce,
        rlang
Config/testthat/edition: 3
LazyData: true
VignetteBuilder: knitr
Config/roxygen2/version: 8.1.0
URL: https://github.com/KatjaDanielzik/MetPhenoR
BugReports: https://github.com/KatjaDanielzik/MetPhenoR/issues
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libicu-dev
        libx11-dev
Repository: https://katjadanielzik.r-universe.dev
Date/Publication: 2026-11-12 08:17:30 UTC
RemoteUrl: https://github.com/katjadanielzik/metphenor
RemoteRef: HEAD
RemoteSha: 215c2e3479946f6235c147ff1c1e480d9dcbdd3b
NeedsCompilation: no
Packaged: 2026-11-12 14:57:38 UTC; root
Author: Katja Danielzik [aut, cre, cph] (ORCID:
    <https://orcid.org/0009-0007-5021-6212>),
  Willson Tjioe [aut] (ORCID: <https://orcid.org/0009-0003-3530-1727>),
  Julia Asche [ctb],
  Johann Matschke [ctb] (ORCID: <https://orcid.org/0000-0003-4878-8741>),
  Daniel Hoffmann [ctb] (ORCID: <https://orcid.org/0000-0003-2973-7869>)
Maintainer: Katja Danielzik <katja.danielzik@uni-due.de>