{
  "_id": "6a17e4b6acfb0bcc41da0b4b",
  "Package": "BayesVolcano",
  "Title": "Creating Volcano Plots from Bayesian Model Posteriors",
  "Version": "1.0.1",
  "Authors@R": "c(person(given=\"Katja\",family= \"Danielzik\", email=\"katja.danielzik@uni-due.de\",\nrole = c(\"aut\", \"cre\",\"cph\"),\ncomment=c(ORCID=\"0009-0007-5021-6212\")),\nperson(given=\"Simo\",family=\"Kitanovski\",role=c(\"aut\",\"ctb\"),\ncomment=c(ORCID=\"0000-0003-2909-5376\")),\nperson(given=\"Daniel\",family=\"Hoffmann\",role=\"aut\",\ncomment=c(ORCID=\"0000-0003-2973-7869\")))",
  "URL": "https://github.com/KatjaDanielzik/BayesVolcano",
  "BugReports": "https://github.com/KatjaDanielzik/BayesVolcano/issues",
  "Description": "Bayesian models are used to estimate effect sizes (e.g.,\ngene expression changes, protein abundance differences, drug\nresponse effects) while accounting for uncertainty, small\nsample sizes, and complex experimental designs. However,\nBayesian posteriors of models with many parameters are often\ndifficult to interpret at a glance. One way to quickly identify\nimportant biological changes based on frequentist analysis are\nvolcano plots (using fold-changes and p-values). Bayesian\nvolcano plots bring together the explicit treatment of\nuncertainty in Bayesian models and the familiar visualization\nof volcano plots.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "LazyData": "true",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://katjadanielzik.r-universe.dev",
  "Date/Publication": "2026-04-28 16:55:43 UTC",
  "RemoteUrl": "https://github.com/katjadanielzik/bayesvolcano",
  "RemoteRef": "HEAD",
  "RemoteSha": "db034502788f72e8e5ec6f23a0f9339a2c46f481",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-28 06:37:55 UTC",
    "User": "root"
  },
  "Author": "Katja Danielzik [aut, cre, cph] (ORCID:\n<https://orcid.org/0009-0007-5021-6212>),\nSimo Kitanovski [aut, ctb] (ORCID:\n<https://orcid.org/0000-0003-2909-5376>),\nDaniel Hoffmann [aut] (ORCID: <https://orcid.org/0000-0003-2973-7869>)",
  "Maintainer": "Katja Danielzik <katja.danielzik@uni-due.de>",
  "MD5sum": "eb617a528549415e6a2fb301ce8ed3f1",
  "_user": "katjadanielzik",
  "_type": "src",
  "_file": "BayesVolcano_1.0.1.tar.gz",
  "_fileid": "4687fd8bd7e3ba507f627c88f7ceb4a4f497e10e1cfbe3bb2f706636d30567ca",
  "_filesize": 1979701,
  "_sha256": "4687fd8bd7e3ba507f627c88f7ceb4a4f497e10e1cfbe3bb2f706636d30567ca",
  "_created": "2026-05-28T06:37:55.000Z",
  "_published": "2026-05-28T06:46:14.629Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78237287716,
      "time": 173,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7259320531"
    },
    {
      "job": 78237287722,
      "time": 182,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7259322933"
    },
    {
      "job": 78237287760,
      "time": 201,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7259377688"
    },
    {
      "job": 78237287719,
      "time": 243,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7259340584"
    },
    {
      "job": 78236799683,
      "time": 240,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7259276979"
    },
    {
      "job": 78237287691,
      "time": 143,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7259313131"
    },
    {
      "job": 78237287729,
      "time": 118,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7259307028"
    },
    {
      "job": 78237287721,
      "time": 107,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7259304316"
    },
    {
      "job": 78237287715,
      "time": 126,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7259308796"
    }
  ],
  "_buildurl": "https://github.com/r-universe/katjadanielzik/actions/runs/26558857873",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/katjadanielzik/bayesvolcano",
  "_commit": {
    "id": "db034502788f72e8e5ec6f23a0f9339a2c46f481",
    "author": "Katja Danielzik <katja.danielzik@uni-due.de>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Add CITATION.cff for software citation information",
    "time": 1777395343
  },
  "_maintainer": {
    "name": "Katja Danielzik",
    "email": "katja.danielzik@uni-due.de",
    "login": "katjadanielzik",
    "description": "",
    "uuid": 161830853
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.5",
      "role": "Depends"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "HDInterval",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "brms",
      "role": "Suggests"
    },
    {
      "package": "rstan",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "katjadanielzik",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-12",
      "n": 17
    },
    {
      "week": "2026-13",
      "n": 12
    },
    {
      "week": "2026-14",
      "n": 3
    },
    {
      "week": "2026-18",
      "n": 3
    }
  ],
  "_tags": [
    {
      "name": "v1.0.1",
      "date": "2026-03-26"
    }
  ],
  "_topics": [
    "bayesian",
    "posterior",
    "visualization",
    "volcano-plot"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "katjadanielzik",
      "count": 28,
      "uuid": 161830853
    },
    {
      "user": "snaketron",
      "count": 2,
      "uuid": 5060977
    }
  ],
  "_userbio": {
    "uuid": 161830853,
    "type": "user",
    "name": "Katja Danielzik"
  },
  "_downloads": {
    "count": 185,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BayesVolcano"
  },
  "_devurl": "https://github.com/katjadanielzik/bayesvolcano",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/BayesVolcano.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/katjadanielzik/bayesvolcano",
  "_realowner": "katjadanielzik",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.1",
      "date": "2026-03-31"
    }
  ],
  "_exports": [
    "extract_fit",
    "plot_volcano",
    "prepare_volcano_input"
  ],
  "_datasets": [
    {
      "name": "annotation_df",
      "title": "A posterior with parameter \"delta_mu\"",
      "object": "annotation_df",
      "class": [
        "data.frame"
      ],
      "fields": [
        "parameter",
        "label",
        "group",
        "value"
      ],
      "rows": 98,
      "table": true,
      "tojson": true
    },
    {
      "name": "posterior",
      "title": "A posterior with parameter \"delta_mu\"",
      "object": "posterior",
      "class": [
        "data.frame"
      ],
      "fields": [
        "delta_mu.1.2.3.4",
        "delta_mu.2.2.3.4",
        "delta_mu.3.2.3.4",
        "delta_mu.4.2.3.4",
        "delta_mu.5.2.3.4",
        "delta_mu.6.2.3.4",
        "delta_mu.7.2.3.4",
        "delta_mu.8.2.3.4",
        "delta_mu.9.2.3.4",
        "delta_mu.10.2.3.4",
        "delta_mu.11.2.3.4",
        "delta_mu.12.2.3.4",
        "delta_mu.13.2.3.4",
        "delta_mu.14.2.3.4",
        "delta_mu.15.2.3.4",
        "delta_mu.16.2.3.4",
        "delta_mu.17.2.3.4",
        "delta_mu.18.2.3.4",
        "delta_mu.19.2.3.4",
        "delta_mu.20.2.3.4",
        "delta_mu.21.2.3.4",
        "delta_mu.22.2.3.4",
        "delta_mu.23.2.3.4",
        "delta_mu.24.2.3.4",
        "delta_mu.25.2.3.4",
        "delta_mu.26.2.3.4",
        "delta_mu.27.2.3.4",
        "delta_mu.28.2.3.4",
        "delta_mu.29.2.3.4",
        "delta_mu.30.2.3.4",
        "delta_mu.31.2.3.4",
        "delta_mu.32.2.3.4",
        "delta_mu.33.2.3.4",
        "delta_mu.34.2.3.4",
        "delta_mu.35.2.3.4",
        "delta_mu.36.2.3.4",
        "delta_mu.37.2.3.4",
        "delta_mu.38.2.3.4",
        "delta_mu.39.2.3.4",
        "delta_mu.40.2.3.4",
        "delta_mu.41.2.3.4",
        "delta_mu.42.2.3.4",
        "delta_mu.43.2.3.4",
        "delta_mu.44.2.3.4",
        "delta_mu.45.2.3.4",
        "delta_mu.46.2.3.4",
        "delta_mu.47.2.3.4",
        "delta_mu.48.2.3.4",
        "delta_mu.49.2.3.4",
        "delta_mu.50.2.3.4",
        "delta_mu.51.2.3.4",
        "delta_mu.52.2.3.4",
        "delta_mu.53.2.3.4",
        "delta_mu.54.2.3.4",
        "delta_mu.55.2.3.4",
        "delta_mu.56.2.3.4",
        "delta_mu.57.2.3.4",
        "delta_mu.58.2.3.4",
        "delta_mu.59.2.3.4",
        "delta_mu.60.2.3.4",
        "delta_mu.61.2.3.4",
        "delta_mu.62.2.3.4",
        "delta_mu.63.2.3.4",
        "delta_mu.64.2.3.4",
        "delta_mu.65.2.3.4",
        "delta_mu.66.2.3.4",
        "delta_mu.67.2.3.4",
        "delta_mu.68.2.3.4",
        "delta_mu.69.2.3.4",
        "delta_mu.70.2.3.4",
        "delta_mu.71.2.3.4",
        "delta_mu.72.2.3.4",
        "delta_mu.73.2.3.4",
        "delta_mu.74.2.3.4",
        "delta_mu.75.2.3.4",
        "delta_mu.76.2.3.4",
        "delta_mu.77.2.3.4",
        "delta_mu.78.2.3.4",
        "delta_mu.79.2.3.4",
        "delta_mu.80.2.3.4",
        "delta_mu.81.2.3.4",
        "delta_mu.82.2.3.4",
        "delta_mu.83.2.3.4",
        "delta_mu.84.2.3.4",
        "delta_mu.85.2.3.4",
        "delta_mu.86.2.3.4",
        "delta_mu.87.2.3.4",
        "delta_mu.88.2.3.4",
        "delta_mu.89.2.3.4",
        "delta_mu.90.2.3.4",
        "delta_mu.91.2.3.4",
        "delta_mu.92.2.3.4",
        "delta_mu.93.2.3.4",
        "delta_mu.94.2.3.4",
        "delta_mu.95.2.3.4",
        "delta_mu.96.2.3.4",
        "delta_mu.97.2.3.4",
        "delta_mu.98.2.3.4"
      ],
      "rows": 1000,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "annotation_df",
      "title": "A posterior with parameter \"delta_mu\"",
      "topics": [
        "annotation_df"
      ]
    },
    {
      "page": "extract_fit",
      "title": "extract_fit",
      "topics": [
        "extract_fit"
      ]
    },
    {
      "page": "plot_volcano",
      "title": "Plot Bayesian Volcano plot",
      "topics": [
        "plot_volcano"
      ]
    },
    {
      "page": "posterior",
      "title": "A posterior with parameter \"delta_mu\"",
      "topics": [
        "posterior"
      ]
    },
    {
      "page": "prepare_volcano_input",
      "title": "Prepare volcano input",
      "topics": [
        "prepare_volcano_input"
      ]
    }
  ],
  "_pkglogo": "https://github.com/katjadanielzik/bayesvolcano/raw/HEAD/man/figures/logo.svg",
  "_readme": "https://github.com/katjadanielzik/bayesvolcano/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "cpp11",
    "dplyr",
    "farver",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "HDInterval",
    "isoband",
    "labeling",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "RColorBrewer",
    "rlang",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "BayesVolcano.Rmd",
      "filename": "BayesVolcano.html",
      "title": "BayesVolcano",
      "author": "Katja Danielzik (katja.danielzik@uni-due.de)",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Background",
        "Installation",
        "Input data",
        "Posterior Samples",
        "Annotation Metadata",
        "Workflow",
        "Step 1: Prepare input data",
        "Customizing Input Parameters",
        "Step 2: Understanding $\\pi$",
        "Step 3: Creating the volcano plot",
        "Adding Credible Intervals",
        "Visualizing Uncertainty with Point Size",
        "Color-Coding Parameters",
        "Step 4: Customizing Your Plot",
        "Adding Titles and Labels",
        "Adding Labels",
        "Conditional Labeling",
        "References"
      ],
      "created": "2026-03-21 18:55:57",
      "modified": "2026-04-28 10:19:31",
      "commits": 13
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": true,
  "_nocasepkg": "bayesvolcano",
  "_universes": [
    "katjadanielzik"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-05-28T06:40:37.000Z",
      "distro": "noble",
      "commit": "db034502788f72e8e5ec6f23a0f9339a2c46f481",
      "fileid": "1043fa32e240e31a56157f83fa2bc702db25160d084a41798430375f14e16afa",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/katjadanielzik/actions/runs/26558857873"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-05-28T06:40:47.000Z",
      "distro": "noble",
      "commit": "db034502788f72e8e5ec6f23a0f9339a2c46f481",
      "fileid": "892d325e4499cf3793ea4066d906ea8170bf355156fb2ca921796b709249aa43",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/katjadanielzik/actions/runs/26558857873"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-05-28T06:44:47.000Z",
      "commit": "db034502788f72e8e5ec6f23a0f9339a2c46f481",
      "fileid": "19f7494a71965670d8d45a3762be9e4c942a2422650c84676e485e2716392322",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/katjadanielzik/actions/runs/26558857873"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-05-28T06:41:48.000Z",
      "commit": "db034502788f72e8e5ec6f23a0f9339a2c46f481",
      "fileid": "e459fe6d72950787ba669d76a4b44ee241409f04e4e7a890b4d11b5a08af85d9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/katjadanielzik/actions/runs/26558857873"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.1",
      "date": "2026-05-28T06:40:38.000Z",
      "commit": "db034502788f72e8e5ec6f23a0f9339a2c46f481",
      "fileid": "9a729816d17cc937d04ff53ac75f937d6acaefed6242d08e04564216c6e568b9",
      "status": "success",
      "buildurl": "https://github.com/r-universe/katjadanielzik/actions/runs/26558857873"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-05-28T06:39:39.000Z",
      "commit": "db034502788f72e8e5ec6f23a0f9339a2c46f481",
      "fileid": "6c033c282dbf2d159662f47c36429e1fb6c13db2e90aa9661b7798f7381e2588",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/katjadanielzik/actions/runs/26558857873"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-05-28T06:39:28.000Z",
      "commit": "db034502788f72e8e5ec6f23a0f9339a2c46f481",
      "fileid": "d5890f13827cbb7c4d1f71c30b3a577c314e7f2ea9d4133e6fae25d13455beb4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/katjadanielzik/actions/runs/26558857873"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-05-28T06:39:44.000Z",
      "commit": "db034502788f72e8e5ec6f23a0f9339a2c46f481",
      "fileid": "65399fefb10d33a943dbec58b27e62ab119e4ed2cf37ed1c5a7bc08b75832c6e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/katjadanielzik/actions/runs/26558857873"
    }
  ]
}