Data requirements | Analysis time | Background | Setup: load required packages | Load data and plot data overview | Model dynamics | sd per time point | sd per condition | Model dynamics in vitro | Fitting of the Bayesian model | Model outputs | Differences of metabolite abundances between time points | Metabolite dynamics vectors | Difference of MDVs between experimental conditions | Cluster dynamics | Over-representation analysis of functional modules in dynamics clusters | Comparison of clusters of different experimental conditions | Dynamics | Metabolites | Combine both

Background | Setup: load required packages | Load data | Model dynamics | Extract estimates and visualize results | Clustering dynamics | Over-Representation Analysis (ORA) | Compare dynamics clusters | Dynamics | Metabolites | Combine both

Prior Parameters | Setting Priors Based on Data | Prior for mean of log-transformed metabolite abundances (prior_mean_abundance) | Prior for standard deviation of log-transformed metaoblite abundances (prior_sd_abundance) | Prior for Cell Counts (prior_counts) | Implementation Example

Background | Installation | Input data | Posterior Samples | Annotation Metadata | Workflow | Step 1: Prepare input data | Customizing Input Parameters | Step 2: Understanding $\pi$ | Step 3: Creating the volcano plot | Adding Credible Intervals | Visualizing Uncertainty with Point Size | Color-Coding Parameters | Step 4: Customizing Your Plot | Adding Titles and Labels | Adding Labels | Conditional Labeling | References