Package: BayesVolcano 1.0.1
BayesVolcano: Creating Volcano Plots from Bayesian Model Posteriors
Bayesian models are used to estimate effect sizes (e.g., gene expression changes, protein abundance differences, drug response effects) while accounting for uncertainty, small sample sizes, and complex experimental designs. However, Bayesian posteriors of models with many parameters are often difficult to interpret at a glance. One way to quickly identify important biological changes based on frequentist analysis are volcano plots (using fold-changes and p-values). Bayesian volcano plots bring together the explicit treatment of uncertainty in Bayesian models and the familiar visualization of volcano plots.
Authors:
BayesVolcano_1.0.1.tar.gz
BayesVolcano_1.0.1.zip(r-4.7-any)BayesVolcano_1.0.1.zip(r-4.6-any)BayesVolcano_1.0.1.zip(r-4.5-any)
BayesVolcano_1.0.1.tgz(r-4.6-any)BayesVolcano_1.0.1.tgz(r-4.5-any)
BayesVolcano_1.0.1.tar.gz(r-4.7-any)BayesVolcano_1.0.1.tar.gz(r-4.6-any)
BayesVolcano_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
BayesVolcano/json (API)
| # Install 'BayesVolcano' in R: |
| install.packages('BayesVolcano', repos = c('https://katjadanielzik.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/katjadanielzik/bayesvolcano/issues
- annotation_df - A posterior with parameter "delta_mu"
- posterior - A posterior with parameter "delta_mu"
bayesianposteriorvisualizationvolcano-plot
Last updated from:7935bd3657. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 164 | ||
| source / vignettes | OK | 184 | ||
| linux-release | NOTE | 160 | ||
| macos-release | NOTE | 195 | ||
| macos-oldrel | NOTE | 213 | ||
| windows-devel | NOTE | 146 | ||
| windows-release | NOTE | 125 | ||
| windows-oldrel | NOTE | 115 | ||
| wasm-release | OK | 125 |
Exports:extract_fitplot_volcanoprepare_volcano_input
Dependencies:clicpp11dplyrfarvergenericsggplot2gluegtableHDIntervalisobandlabelinglifecyclemagrittrpillarpkgconfigpurrrR6RColorBrewerrlangS7scalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A posterior with parameter "delta_mu" | annotation_df |
| extract_fit | extract_fit |
| Plot Bayesian Volcano plot | plot_volcano |
| A posterior with parameter "delta_mu" | posterior |
| Prepare volcano input | prepare_volcano_input |
